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1

Efficient Nonequilibrium Method for Binding Free Energy Calculations in Molecular Dynamics Simulations

Sandberg, Robert B., Banchelli, Martina, Guardiani, Carlo, Menichetti, Stefano, Caminati, Gabriella, Procacci, Piero

Journal:

Journal of Chemical Theory and Computation

Year:

2015

Language:

english

File:

PDF, 1.11 MB

english, 2015

2

A model of sympatric speciation through assortative mating

Franco Bagnoli, Carlo Guardiani

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2005

Language:

english

File:

PDF, 676 KB

english, 2005

3

Media effects in modulating the conformational equilibrium of a model compound for tumor necrosis factor converting enzyme inhibition

Banchelli, Martina, Guardiani, Carlo, Sandberg, Robert B., Menichetti, Stefano, Procacci, Piero, Caminati, Gabriella

Journal:

Journal of Molecular Structure

Year:

2015

Language:

english

File:

PDF, 1.79 MB

english, 2015

4

[ACM Press the 42nd annual conference - San Diego, California, USA (2005.06.13-2005.06.17)] Proceedings of the 42nd annual conference on Design automation - DAC '05 - DFM rules!

Sherwani, Naveed, Mack, Susan Lippincott, Alexanian, Alex, Buch, Premal, Guardiani, Carlo, Lehon, Harold, Rabkin, Peter, Sharan, Atul

Year:

2005

Language:

english

File:

PDF, 145 KB

english, 2005

5

On the selectivity of the NaChBac channel: an integrated computational and experimental analysis of sodium and calcium permeation

Guardiani, Carlo, Fedorenko, Olena A., Roberts, Stephen K., Khovanov, Igor A.

Journal:

Physical Chemistry Chemical Physics

Year:

2017

Language:

english

File:

PDF, 3.32 MB

english, 2017

6

Exploring the pore charge dependence of K + and Cl − permeation across a graphene monolayer: a molecular dynamics study

Guardiani, Carlo, Gibby, William A. T., Barabash, Miraslau L., Luchinsky, Dmitry G., McClintock, Peter V. E.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.13 MB

english, 2019

7

[IEEE 2020 IEEE 24th International Conference on Intelligent Engineering Systems (INES) - ReykjavÃk, Iceland (2020.7.8-2020.7.10)] 2020 IEEE 24th International Conference on Intelligent Engineering Systems (INES) - Rivet inspection with multi-sensor robotic system

Canali, Carlo, Pistone, Alessandro, Gloriani, Claudio, Guardiani, Paolo, Ludovico, Daniele, Caldwell, Darwin G.

Year:

2020

File:

PDF, 571 KB

2020

8

SPIE Proceedings [SPIE SPIE Fourth International Symposium on Fluctuations and Noise - Florence, Italy (Sunday 20 May 2007)] Noise and Fluctuations in Biological, Biophysical, and Biomedical Systems - Computational characterization of the mutation impact on domain C5 of Myosin Binding Protein C

Guardiani, Carlo, Bezrukov, Sergey M., Cecconi, Fabio, Livi, Roberto

Year:

2007

Language:

english

File:

PDF, 475 KB

english, 2007

9

The conformational landscape of tartrate-based inhibitors of the TACE enzyme as revealed by Hamiltonian Replica Exchange simulation

Guardiani, Carlo, Procacci, Piero

Journal:

Physical Chemistry Chemical Physics

Year:

2013

Language:

english

File:

PDF, 2.25 MB

english, 2013

10

A toy model of polymer stretching

Guardiani, Carlo, Bagnoli, Franco

Journal:

The Journal of Chemical Physics

Year:

2006

Language:

english

File:

PDF, 184 KB

english, 2006

11

Stability and Kinetic Properties of C5-Domain from Myosin Binding Protein C and its Mutants

Guardiani, Carlo, Cecconi, Fabio, Livi, Roberto

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 622 KB

english, 2008

12

Chemical–physical analysis of a tartrate model compound for TACE inhibition

Banchelli, Martina, Guardiani, Carlo, Tenori, Eleonora, Menichetti, Stefano, Caminati, Gabriella, Procacci, Piero

Journal:

Physical Chemistry Chemical Physics

Year:

2013

Language:

english

File:

PDF, 2.45 MB

english, 2013

13

[ACM Press the 32nd ACM/IEEE conference - San Francisco, California, United States (1995.06.12-1995.06.16)] Proceedings of the 32nd ACM/IEEE conference on Design automation conference - DAC '95 - An assigned probability technique to derive realistic worst-case timing models of digital standard cells

Dal Fabbro, Alessandro, Franzini, Bruno, Croce, Luigi, Guardiani, Carlo

Year:

1995

Language:

english

File:

PDF, 42 KB

english, 1995

14

Testing Simplified Proteins Models of the hPin1 WW Domain

Cecconi, Fabio, Guardiani, Carlo, Livi, Roberto

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 323 KB

english, 2006

15

Conformational Landscape of N-Glycosylated Peptides Detecting Autoantibodies in Multiple Sclerosis, Revealed by Hamiltonian Replica Exchange

Guardiani, Carlo, Signorini, Giorgio F., Livi, Roberto, Papini, Anna Maria, Procacci, Piero

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 2.17 MB

english, 2012

16

Coarse-grained modeling of protein unspecifically bound to DNA

Guardiani, Carlo, Cencini, Massimo, Cecconi, Fabio

Journal:

Physical Biology

Year:

2014

Language:

english

File:

PDF, 1.97 MB

english, 2014

17

Computational analysis of folding and mutation properties of C5 domain of myosin binding protein C

Carlo Guardiani, Fabio Cecconi, Roberto Livi

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 398 KB

english, 2008

18

Preliminary Characterization of VDAC3, an Elusive Member of the Outer Mitochondrial Membrane Pore Family

Reina, Simona, Checchetto, Vanessa, Guarino, Francesca, Guardiani, Carlo, Belfiore, Ramona, Ceccarelli, Matteo, Szabo, Ildiko, De Pinto, Vito

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 42 KB

english, 2015

19

SPIE Proceedings [SPIE Advanced Microelectronic Manufacturing - Santa Clara, CA (Sunday 23 February 2003)] Design and Process Integration for Microelectronic Manufacturing - Characterization and modeling of intradie variation and its applications to design for manufacturability

Saxena, Sharad, Starikov, Alexander, Guardiani, Carlo, Quarantelli, Michele, Dragone, Nicola, Minehane, Sean, McNamara, Patrick, Babcock, Jeff A.

Year:

2003

Language:

english

File:

PDF, 131 KB

english, 2003

20

A microscopic model of evolution of recombination

Franco Bagnoli, Carlo Guardiani

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2005

Language:

english

File:

PDF, 716 KB

english, 2005

21

Coarse Grained Modeling and Approaches to Protein Folding

Guardiani, Carlo, Livi, Roberto, Ce cconi, Fabio

Journal:

Current Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.14 MB

english, 2010

22

Novel Integrated Robotic System for Tiny Duct Inspection

Guardiani, Paolo, Canali, Carlo, Pistone, Alessandro, Leggieri, Sergio, Gloriani, Claudio, Rahman, Nahian, Cannella, Ferdinando, Caldwell, Darwin

Journal:

Procedia Manufacturing

Year:

2018

Language:

english

File:

PDF, 1.06 MB

english, 2018

23

Analyzing pathogenic mutations of C5 domain from cardiac myosin binding protein C through MD simulations

Fabio Cecconi, Carlo Guardiani, Roberto Livi

Journal:

European Biophysics Journal

Year:

2008

Language:

english

File:

PDF, 326 KB

english, 2008

24

[ACM Press the 1998 international symposium - Monterey, California, United States (1998.08.10-1998.08.12)] Proceedings of the 1998 international symposium on Low power electronics and design - ISLPED '98 - Automatic characterization and modeling of power consumption in static RAMs

Chinosi, Mauro, Zafalon, Roberto, Guardiani, Carlo

Year:

1998

File:

PDF, 296 KB

1998

25

The N-Terminal Peptides of the Three Human Isoforms of the Mitochondrial Voltage-Dependent Anion Channel Have Different Helical Propensities

Guardiani, Carlo, Scorciapino, Mariano Andrea, Amodeo, Giuseppe Federico, Grdadolnik, Joze, Pappalardo, Giuseppe, De Pinto, Vito, Ceccarelli, Matteo, Casu, Mariano

Journal:

Year:

2015

Language:

english

File:

PDF, 1.96 MB

english, 2015

26

Deep Endoscope: Intelligent Duct Inspection for the Avionic Industry

Martelli, Samuele, Mazzei, Luca, Canali, Carlo, Guardiani, Paolo, Giunta, Salvatore, Ghiazza, Alberto, Mondino, Ivan, Cannella, Ferdinando, Murino, Vittorio, Del Bue, Alessio

Journal:

IEEE Transactions on Industrial Informatics

Year:

2018

Language:

english

File:

PDF, 25.87 MB

english, 2018

27

Exploring the pore charge dependence of K + and Cl − permeation across a graphene monolayer: a molecular dynamics study

Guardiani, Carlo, Gibby, William A. T., Barabash, Miraslau L., Luchinsky, Dmitry G., McClintock, Peter V. E.

Journal:

Year:

2019

File:

PDF, 2.13 MB

2019

28

Exploring the Unfolding Pathway of Maltose Binding Proteins: An Integrated Computational Approach

Guardiani, Carlo, Marino, Daniele Di, Tramontano, Anna, Chinappi, Mauro, Cecconi, Fabio

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 3.57 MB

english, 2014

29

Monitoring performance and efficiency of photovoltaic parks

Bizzarri, Federico, Brambilla, Angelo, Caretta, Lorenzo, Guardiani, Carlo

Journal:

Renewable Energy

Year:

2015

Language:

english

File:

PDF, 742 KB

english, 2015

30

Sodium Binding Sites and Permeation Mechanism in the NaChBac Channel: A Molecular Dynamics Study

Guardiani, Carlo, Rodger, P. Mark, Fedorenko, Olena A., Roberts, Stephen K., Khovanov, Igor A.

Journal:

Journal of Chemical Theory and Computation

Year:

2017

Language:

english

File:

PDF, 1.99 MB

english, 2017

31

[ACM Press the 36th ACM/IEEE conference - New Orleans, Louisiana, United States (1999.06.21-1999.06.25)] Proceedings of the 36th ACM/IEEE conference on Design automation conference - DAC '99 - Parallel mixed-level power simulation based on spatio-temporal circuit partitioning

Chinosi, Mauro, Zafalon, Roberto, Guardiani, Carlo

Year:

1999

Language:

english

File:

PDF, 86 KB

english, 1999

32

Conformational structure of the MOG-derived peptide 101–108 in solution

Carlo Guardiani, Simone Marsili, Stefania Marchetti, Cecilia Gambi, Piero Procacci, Roberto Livi

Journal:

Year:

2011

Language:

english

File:

PDF, 315 KB

english, 2011

33

[ACM Press the 1998 international symposium - Monterey, California, United States (1998.08.10-1998.08.12)] Proceedings of the 1998 international symposium on Low power electronics and design - ISLPED '98 - Power invariant vector compaction based on bit clustering and temporal partitioning

Dragone, Nicola, Zafalon, Roberto, Guardiani, Carlo, Silvano, Cristina

Year:

1998

File:

PDF, 469 KB

1998

34

A computational study of ion current modulation in hVDAC3 induced by disulfide bonds

Guardiani, Carlo, Leggio, Loredana, Scorciapino, Mariano Andrea, de Pinto, Vito, Ceccarelli, Matteo

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2016

Language:

english

File:

PDF, 1.77 MB

english, 2016

35

yVDAC2, the second mitochondrial porin isoform of Saccharomyces cerevisiae

Guardiani, Carlo, Magrì, Andrea, Karachitos, Andonis, Di Rosa, Maria Carmela, Reina, Simona, Bodrenko, Igor, Messina, Angela, Kmita, Hanna, Ceccarelli, Matteo, De Pinto, Vito

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2018

Language:

english

File:

PDF, 5.07 MB

english, 2018

36

[IEEE Eighteenth European Solid-State Circuits Conference (ESSCIRC '92) - Copenhagen (1992.09.21-1992.09.23)] ESSCIRC '92: Eighteenth European Solid-State Circuits conference - Yield optimization of analog ICs using 2-step analytic modeling methods

Guardiani, Carlo, Scandolara, Primo, Benkoski, Jacques, Nicollini, Geraiano

Year:

1992

Language:

english

File:

PDF, 2.31 MB

english, 1992

37

[ACM Press the 34th annual conference - Anaheim, California, United States (1997.06.09-1997.06.13)] Proceedings of the 34th annual conference on Design automation conference - DAC '97 - Accurate and efficient macromodel of submicron digital standard cells

Forzan, Cristiano, Franzini, Bruno, Guardiani, Carlo

Year:

1997

Language:

english

File:

PDF, 75 KB

english, 1997

38

Unexpected Modifications of Cysteines in VDAC3: Indication that VDAC3 may Signal the Mitochondrial Intermembrane Redox State

Reina, Simona, Checchetto, Vanessa, Saletti, Rosaria, Gupta, Ankit, Chaturvedi, Deepti, Guardiani, Carlo, Guarino, Francesca, Andrea Scorciapino, Mariano, Magrì, Andrea, Foti, Salvatore, Ceccarelli, M

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 47 KB

english, 2016

39

Can modification of VDAC(s) cysteine residues act as a sensor of oxidative state of the intermembrane space of mitochondria?

Reina, Simona, Checchetto, Vanessa, Saletti, Rosaria, Gupta, Ankit, Chaturvedi, Deepti, Guardiani, Carlo, Guarino, Francesca, Scorciapino, Mariano Andrea, Magrì, Andrea, Foti, Salvatore, Ceccarelli, M

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2016

Language:

english

File:

PDF, 51 KB

english, 2016

40

Fragment 101−108 of Myelin Oligodendrocyte Glycoprotein: A Possible Lead Compound for Multiple Sclerosis

Guardiani, Carlo, Marsili, Simone, Procacci, Piero, Livi, Roberto

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 4.16 MB

english, 2009

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